Proteins · Binding Site Prediction · Protein Language Models

Predict protein-ligand
binding sites

Upload an mmCIF or PDB coordinate file to run binding site prediction. Results are visualised interactively with confidence scores.

Drop coordinate file or click to browse

.mmcif · .cif · .pdb · max 50 mb

Prediction model

GBS

General Binding

Standard druggable pockets on the protein surface

CBS

Cryptic Binding

Hidden sites revealed under conformational change

* Mean runtime is approximately 2-5 minutes depending on number of chains and chain length.

Predicted Pockets

Pocket 1 87.4

ARG45 · TYR48 · LEU72 · ASP74

Pocket 2 72.1

ARG45 · TYR48 · LEU72 · ASP74

Pocket 3 52.0

ARG45 · TYR48 · LEU72 · ASP74

Predict protein-ligandbinding sites