Seq2Pocket
Charles University · v1.0
Research Tool  ·  Binding Site Prediction  ·  Protein Language Models

Predict protein
structure from file

Upload an mmCIF or PDB coordinate file to run deep-learning structure predictions. Results are visualised interactively in 3D with per-residue confidence scores and annotated secondary structure.

Drop coordinate file or click to browse
.mmcif  ·  .cif  ·  .pdb  ·  .ent  ·  max 50 mb
Prediction model
* Mean runtime is approximately 30–90 seconds depending on chain length.
Initialising model weights…
0%
PDB 1abc_refined.pdb
Predicted Pockets
Pocket 1 87.4
ARG45 · TYR48 · LEU72 · ASP74
Pocket 2 72.1
ARG45 · TYR48 · LEU72 · ASP74
Pocket 3 52.0
ARG45 · TYR48 · LEU72 · ASP74